Alignment of alleles: Charr (Salvelinus alpinus) IGHV4S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 D   I   R   L   D   Q   S   P   P       Q   V   K   R   P   G   D   T   V   K
  AJ000368,IGHV4S1*01           GAT ATA AGG CTG GAT CAG TCT CCT CCT ... CAA GTG AAA AGA CCT GGA GAC ACT GTT AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   S   C   T   I   S   G   F   S   M   S   G   F   W                   I   H
  AJ000368,IGHV4S1*01           TTG TCC TGT ACA ATC TCT GGT TTC TCA ATG AGT GGC TTC TGG ... ... ... ... ATA CAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   M   R   Q   N   Q   G   K   A   L   E   W   I   G   R   M   N   S   N   S
  AJ000368,IGHV4S1*01           TGG ATG AGG CAG AAC CAA GGC AAA GCC CTA GAG TGG ATC GGG AGA ATG AAT AGC AAC TCT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 P                   V   Y   S   D   S   L   K       G   Q   F   A   L   T   E
  AJ000368,IGHV4S1*01           CCA ... ... ... ... GTC TAC TCA GAC TCC CTG AAA ... GGC CAG TTC GCC CTG ACT GAG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   V   S   T   S   T   Q   F   L   E   A   K   S   L   R   S   E   D   S   A
  AJ000368,IGHV4S1*01           GAC GTC TCC ACA AGC ACA CAG TTC TTA GAG GCC AAG AGT CTG AGA TCA GAG GAC TCT GCT

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AJ000368,IGHV4S1*01           GTT TAT TAT TGT GCC CGA  #c
#c: rearranged cDNA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/07/2003
Author: Nathalie Bosc